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1.42 W niwanmao 管理组

前段时间,为了寻找相关的流式设门算法,在GOOGLECODE上找到了一个PYTHON编写的流式数据分析库,看了下作者的ROADMAP,很多IDEA跟我们在意见征集贴中发表的意见一致。而且,作者Jacob做的非常详细,很多功能我们都没想到。我最近在准备编译试用,但由于编译时出现问题,无法正常编译,正在与作者联系解决,并在信中希望他能够把软件编译成windows和linux下能直接使用的软件包。
等待作者的回音,我这段时间也会努力把编译的问题解决掉,努力让大家能够早日用上这款软件。

下面是该python库的roadmap:
Introduction
Below are Ideas and road map of development.
Details
Goals
  • Create a Python library for flow cytometry data analysis, data
    management and visualization.

2. Requirements
  • [ ] Consistent API
2. [ ] Libraries 3. [ ] Fast
  • [ ] Use optimal data structures and alogrithms
2. [ ] Use numpy vector calculations 3. [ ] Foreign language interface (e.g. Cython) 4. [ ] Multi-core 5. [ ] Multi-processor 6. [ ] Exploit GPU
Data structures 0/5
  • [ ] FCM class 0/5
    • [ ] Components include FCM data, annotations
    2. [ ] Behaves like numpy array 3. [ ] Operations can be chained 4. [ ] Maintains audit trail 5. [ ] QA measures
2. [ ] FCM collection class 0/4
  • [ ] Experimental annotations
2. [ ] Common gating strategy 3. [ ] Controls 4. [ ] QA measures
3. [ ] FCM Analysis classes 0/1
  • [ ] Tree structure of "clusters"
4. [ ] FCM collection analysis class 0/0 (?)
  • [ ] For comparisons of data sets in collection
Modules /
  • [ ] IO /
    • [ ] FCS read and write
    2. [ ] Bioconductor read and write 3. [ ] XML read and write
2. [ ] Compensate /
  • [ ] Automated
2. [ ] Manual
3. [ ] Transform /
  • [ ] Log
2. [ ] Logicle 3. [ ] Hyperlog
4. [ ] Project /
  • [ ] PCA
2. [ ] ICA
5. [ ] Gate /
  • [ ] Polygonal
2. [ ] Ellipse 3. [ ] Quadrant
6. [ ] Statistics /
  • [ ] Exploratory /
  • [ ] Targeted sampling
2. [ ] Clustering - Bayesian EM, DP family, variational
family, search family
3. [ ] Classification - mode hunting 4. [ ] Marker analysis - DiME
2. [ ] Inference /
  • [ ] Data comparisons
2. [ ] Time series analysis 3. [ ] Stochastic shotgun search
7. [ ] Graphics /
  • [ ] Gating
2. [ ] Statistical graphics
8. [ ] GUI /
  • [ ] Web
2. [ ] Application
9. [ ] Data management /
  • [ ] Database interface
2. [ ] Network interface
  • . [ ] Parallel /
    • [ ] Multiprocessing
    2. [ ] MPI 3. [ ] Map-reduce with Hadoop/Dumbo


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有 30 条回复

2楼 chujindong LV6

虽然不懂,还是精神上支持一下站长!加油啊!

3楼 niwanmao 楼主


通过描述,这款软件应该是比较不错的,可惜似乎作者在某些方面还没有完善,我这么多天还是没有成功编译。给作者发过email,就回了一次,后来就不回了,估计杜克大学的人比较傲。
我接下来再努力努力看,找找那些懂python的人试试。

4楼 stef1981 LV6

站长辛苦了

5楼 jus_immo LV2

倪老师加油~~期待FCS Manager早日面世~~~

6楼 haven_t LV6

本帖最后由 haven_t 于 2011-8-3 16:50 编辑

Modules 中看到Logicle 和Hyperlog,恕我多口提醒一下,Logicle 转换似乎在美国申请了专利,您可以上美国的专利局上查一下,好像是在申请通过后才在cytometry上发表了相关的文章,所以最好还是回避,毕竟只是一个算法而已,可以绕过去的,而且这个东西大家不会太在意的。

7楼 niwanmao 楼主

引用: haven_t 发表于 2011-8-3 16:49
在Modules 中看到Logicle 和Hyperlog,恕我多口提醒一下,Logicle 转换似乎在美国申请了专利,您可以上美国 ...

的确如此。
http://www.google.com.hk/patents/about?id=AeSaAAAAEBAJ
感谢提醒。

8楼 mary_jhy2 LV1

   站长费心了!赞一个!

9楼 haven_t LV6

我有同事在杜克大学进修哦,作者是谁啊,哪个系的? 我可以叫他帮忙联系一下

10楼 chilliping LV2

加油!真是惊喜加感激
加载更多